Keep unused levels in bar plot

ghz 1years ago ⋅ 3868 views

Question

I want to plot unused levels (that is, levels where the count is 0) in my bar- plot, however, unused levels are dropped and I cannot figure out how to keep them

df <- data.frame(type=c("A", "A", "A", "B", "B"), group=rep("group1", 5))
df$type <- factor(df$type, levels=c("A","B", "C"))

ggplot(df, aes(x=group, fill=type)) + geom_bar()

In the above example, I want to see C plotted with a count of 0, but it is completely absent...

Thanks for any help Ulrik

Edit:

This does what I want

df <- data.frame(type=c("A", "A", "A", "B", "B"), group=rep("group1", 5))
df1 <- data.frame(type=c("A", "A", "A", "B", "B", "A", "A", "C", "B", "B"), group=c(rep("group1", 5),rep("group2", 5)))

df$type <- factor(df$type, levels=c("A","B", "C"))
df1$type <- factor(df1$type, levels=c("A","B", "C"))
df <- data.frame(table(df))

df1 <- data.frame(table(df1))

ggplot(df, aes(x=group, y=Freq, fill=type)) + geom_bar(position="dodge")
ggplot(df1, aes(x=group, y=Freq, fill=type)) + geom_bar(position="dodge")

Guess the solution is to calculate the frequencies using table() and then plot

Answer

You need to set drop=FALSE on both scales (fill and x) like this:

library(ggplot2)
df <- data.frame(type=c("A", "A", "A", "B", "B"), group=rep("group1", 5))
df1 <- data.frame(type=c("A", "A", "A", "B", "B", "A", "A", "C", "B", "B"), group=c(rep("group1", 5),rep("group2", 5)))
df$type <- factor(df$type, levels=c("A","B", "C"))
df1$type <- factor(df1$type, levels=c("A","B", "C"))

plt <-  ggplot(df, aes(x=type, fill=type)) + 
          geom_bar(position='dodge') + 
          scale_fill_discrete(drop=FALSE) +
          scale_x_discrete(drop=FALSE)
plt1 <- ggplot(df1, aes(x=type, fill=type)) + 
          geom_bar(position='dodge') + 
          scale_fill_discrete(drop=FALSE) +
          scale_x_discrete(drop=FALSE)

Edit:

I'm pretty sure this works. Forgot to change x to type instead of group and the position='dodge'! Just paste and test. The stat_bin deals with bins with zero counts. Check the docs.

#r